hbk3001

I am shortly going to begin restoring an 89 rs and the vehicle has some body issue iwas hoping someone could help with. the passenger side of the vehicle on the roof has an upwards dent in it from some one lifting the car by the roof. The bottom of the door lines up with the bottom of the vehicle perfectly and being under the car the bottom is in good shape as well. however the door latch misses the latch on the car by about 2 inches as well as the top of the window misses the roof by the same, how would I go about fixing this kind of problem?
thanks alot.